!55 upgrade to 1.12.0

From: @SuperSix173 
Reviewed-by: @wangbin224 
Signed-off-by: @wangbin224

0001-BLD-copy-cython_optimize.pxd-to-build-dir-18810.patch

@@ -1,66 +0,0 @@
-From 3c89445b6439f3ce7bffc4cf11c6407c39faedc5 Mon Sep 17 00:00:00 2001
-From: Matus Valo <matusvalo@users.noreply.github.com>
-Date: Thu, 6 Jul 2023 16:55:25 +0200
-Subject: [PATCH] BLD: copy `cython_optimize.pxd` to build dir (#18810)
-
-Closes gh-18792
-
-[skip cirrus] [skip circle]
-
----------
-
-Co-authored-by: Ralf Gommers <ralf.gommers@gmail.com>
----
- scipy/optimize/cython_optimize.pxd         | 2 +-
- scipy/optimize/cython_optimize/meson.build | 1 +
- scipy/optimize/meson.build                 | 8 +++++++-
- 3 files changed, 9 insertions(+), 2 deletions(-)
-
-diff --git a/scipy/optimize/cython_optimize.pxd b/scipy/optimize/cython_optimize.pxd
-index d5a0bdd75..d35f8da68 100644
---- a/scipy/optimize/cython_optimize.pxd
-+++ b/scipy/optimize/cython_optimize.pxd
-@@ -7,5 +7,5 @@
- # support. Changing it causes an ABI forward-compatibility break
- # (gh-11793), so we currently leave it as is (no further cimport
- # statements should be used in this file).
--from .cython_optimize._zeros cimport (
-+from scipy.optimize.cython_optimize._zeros cimport (
-     brentq, brenth, ridder, bisect, zeros_full_output)
-diff --git a/scipy/optimize/cython_optimize/meson.build b/scipy/optimize/cython_optimize/meson.build
-index 359ea8418..ee8def39b 100644
---- a/scipy/optimize/cython_optimize/meson.build
-+++ b/scipy/optimize/cython_optimize/meson.build
-@@ -17,6 +17,7 @@ cy_opt_gen = generator(cython,
-   arguments : cython_args,
-   output : '@BASENAME@.c',
-   depends : [_cython_tree,
-+    cython_optimize_pxd,
-     _dummy_init_optimize,
-     _dummy_init_cyoptimize])
- 
-diff --git a/scipy/optimize/meson.build b/scipy/optimize/meson.build
-index 26458b05c..4c5ab7983 100644
---- a/scipy/optimize/meson.build
-+++ b/scipy/optimize/meson.build
-@@ -206,10 +206,16 @@ endif
- 
- _dummy_init_optimize = fs.copyfile('__init__.py')
- 
-+# Copying this .pxd file is only needed because of a Cython bug, see
-+# discussion on SciPy PR gh-18810.
-+cython_optimize_pxd = [
-+  fs.copyfile('cython_optimize.pxd'),
-+]
-+
- opt_gen = generator(cython,
-   arguments : cython_args,
-   output : '@BASENAME@.c',
--  depends : [_cython_tree, cython_linalg, _dummy_init_optimize])
-+  depends : [_cython_tree, cython_linalg, cython_optimize_pxd, _dummy_init_optimize])
- 
- _bglu_dense_c = opt_gen.process('_bglu_dense.pyx')
- 
--- 
-2.23.0
-

0001-MAINT-Allow-scipy-to-be-compiled-in-cython3-18242.patch

@@ -1,47 +0,0 @@
-From a181fd5b75f2e05d1b7beafbb48157feaa468941 Mon Sep 17 00:00:00 2001
-From: Matus Valo <matusvalo@users.noreply.github.com>
-Date: Wed, 3 May 2023 22:22:36 +0200
-Subject: [PATCH] MAINT: Allow scipy to be compiled in cython3 (#18242)
-
-- Unpin Cython and use Cython master in the pre-release CI job
-- Use absolute instead of relative imports in a few places
-- Use `CYTHON_EXTERN_C` for C++ code exposing a C API
-
-[skip ci]
----
- .github/workflows/linux_meson.yml | 5 ++---
- scipy/linalg.pxd                  | 2 +-
- scipy/special.pxd                 | 2 +-
- scipy/special/meson.build         | 2 +-
- 4 files changed, 5 insertions(+), 6 deletions(-)
-
-diff --git a/scipy/linalg.pxd b/scipy/linalg.pxd
-index 1f656b870..c7c49f9ad 100644
---- a/scipy/linalg.pxd
-+++ b/scipy/linalg.pxd
-@@ -1 +1 @@
--from .linalg cimport cython_blas, cython_lapack
-+from scipy.linalg cimport cython_blas, cython_lapack
-diff --git a/scipy/special.pxd b/scipy/special.pxd
-index 62cb82807..1daa9fb37 100644
---- a/scipy/special.pxd
-+++ b/scipy/special.pxd
-@@ -1 +1 @@
--from .special cimport cython_special
-+from scipy.special cimport cython_special
-diff --git a/scipy/special/meson.build b/scipy/special/meson.build
-index 334f87943..e7e25aa54 100644
---- a/scipy/special/meson.build
-+++ b/scipy/special/meson.build
-@@ -371,7 +371,7 @@ py3.extension_module('_ufuncs_cxx',
-   [ufuncs_cxx_sources,
-     uf_cython_gen_cpp.process(cython_special[2]),  # _ufuncs_cxx.pyx
-     ],
--  cpp_args: cython_cpp_args,
-+  cpp_args: [cython_cpp_args, '-DCYTHON_EXTERN_C=extern "C"'],
-   include_directories: [inc_np, '../_lib/boost', '../_lib',
-                         '../_build_utils/src'],
-   link_args: version_link_args,
--- 
-2.23.0
-

0001-Mark-function-pointer-ctypedefs-as-noexcept.patch

@@ -1,67 +0,0 @@
-From 50d0825256ddb76c5567e6cc8eb50e7d36908e21 Mon Sep 17 00:00:00 2001
-From: Matus Valo <matusvalo@gmail.com>
-Date: Mon, 17 Apr 2023 23:00:04 +0200
-Subject: [PATCH] Mark function pointer ctypedefs as noexcept
-
----
- scipy/cluster/_hierarchy_distance_update.pxi | 2 +-
- scipy/optimize/cython_optimize/_zeros.pxd    | 2 +-
- scipy/stats/_qmc_cy.pyx                      | 2 +-
- scipy/stats/_unuran/unuran_wrapper.pyx.templ | 2 +-
- 4 files changed, 4 insertions(+), 4 deletions(-)
-
-diff --git a/scipy/cluster/_hierarchy_distance_update.pxi b/scipy/cluster/_hierarchy_distance_update.pxi
-index 17dedb305..bc57a3fa1 100644
---- a/scipy/cluster/_hierarchy_distance_update.pxi
-+++ b/scipy/cluster/_hierarchy_distance_update.pxi
-@@ -24,7 +24,7 @@ d_xyi : double
- """
- ctypedef double (*linkage_distance_update)(double d_xi, double d_yi,
-                                            double d_xy, int size_x,
--                                           int size_y, int size_i)
-+                                           int size_y, int size_i) noexcept
- 
- 
- cdef double _single(double d_xi, double d_yi, double d_xy,
-diff --git a/scipy/optimize/cython_optimize/_zeros.pxd b/scipy/optimize/cython_optimize/_zeros.pxd
-index c6241d022..d3c9e98f0 100644
---- a/scipy/optimize/cython_optimize/_zeros.pxd
-+++ b/scipy/optimize/cython_optimize/_zeros.pxd
-@@ -4,7 +4,7 @@
- # should be made to this file** --- any API additions/changes should be
- # done in `cython_optimize.pxd` (see gh-11793).
- 
--ctypedef double (*callback_type)(double, void*)
-+ctypedef double (*callback_type)(double, void*) noexcept
- 
- ctypedef struct zeros_parameters:
-     callback_type function
-diff --git a/scipy/stats/_qmc_cy.pyx b/scipy/stats/_qmc_cy.pyx
-index f165cb0d1..a9e94354f 100644
---- a/scipy/stats/_qmc_cy.pyx
-+++ b/scipy/stats/_qmc_cy.pyx
-@@ -290,7 +290,7 @@ cdef double c_update_discrepancy(double[::1] x_new_view,
- 
- 
- ctypedef double (*func_type)(double[:, ::1], Py_ssize_t,
--                             Py_ssize_t) nogil
-+                             Py_ssize_t) noexcept nogil
- 
- 
- cdef double threaded_loops(func_type loop_func,
-diff --git a/scipy/stats/_unuran/unuran_wrapper.pyx.templ b/scipy/stats/_unuran/unuran_wrapper.pyx.templ
-index 2279dfc34..9eb63fb1c 100644
---- a/scipy/stats/_unuran/unuran_wrapper.pyx.templ
-+++ b/scipy/stats/_unuran/unuran_wrapper.pyx.templ
-@@ -58,7 +58,7 @@ class UNURANError(RuntimeError):
-     pass
- 
- 
--ctypedef double (*URNG_FUNCT)(void *) nogil
-+ctypedef double (*URNG_FUNCT)(void *) noexcept nogil
- 
- IF not NPY_OLD:
-     cdef object get_numpy_rng(object seed = None):
--- 
-2.23.0
-

scipy.spec

@@ -1,21 +1,26 @@
-%global py_setup_args config_fc --fcompiler=gnu95 --noarch
 %global debug_package %{nil}
 Name: scipy
-Version: 1.10.1
+Version: 1.12.0
-Release: 3
+Release: 1
 Summary: A Python-based ecosystem of open-source software for mathematics, science, and engineering
 License: Qhull and Apache-2.0
 URL: https://www.scipy.org
 Source0: https://github.com/scipy/scipy/releases/download/v%{version}/scipy-%{version}.tar.gz
+# https://github.com/data-apis/array-api-compat/archive/affd3a56927d3d1c178023121f43c9fa624eced0.zip
+Source1: array_api_compat.zip
+# https://github.com/boostorg/math/archive/6bfe5818acdf86432f3e1a78ec5e1d3cdb8c6480.zip
+Source2: boost_math.zip
+# https://github.com/scipy/HiGHS/archive/4a122958a82e67e725d08153e099efe4dad099a2.zip 
+Source3: highs.zip
+# https://github.com/scipy/unuran/archive/1d315c690787b14781a12e0beca6d25cc75562d6.zip
+Source4: unuran.zip
+# https://github.com/scipy/PROPACK/archive/96f6800451372dd003e627bbfd732937ac0c685e.zip
+Source5: PROPACK.zip
 
-Patch6001:	0001-MAINT-Explicitly-mark-cdef-functions-not-raising-exc.patch
+BuildRequires: python3-devel python3-numpy-f2py
-Patch6002:	0001-Mark-function-pointer-ctypedefs-as-noexcept.patch
-Patch6003:	0001-MAINT-Allow-scipy-to-be-compiled-in-cython3-18242.patch
-Patch6004:	0001-BLD-copy-cython_optimize.pxd-to-build-dir-18810.patch
-
-BuildRequires: python3-devel python3-numpy >= 1.8.2 python3-numpy-f2py
 BuildRequires: gcc-c++ openblas-devel gcc-gfortran chrpath
 BuildRequires: pybind11-devel python3-pybind11 python3-Cython
+BuildRequires: python3-meson-python python3-pip
 
 %description
 SciPy (pronounced "Sigh Pie") is open-source software for mathematics, science, and engineering. 
@@ -39,46 +44,48 @@ python3 package for scipy
 %prep
 %autosetup -n %{name}-%{version} -p1
 
-cat > site.cfg << EOF
+sed -i '/pythran/d' pyproject.toml
-[amd]
-library_dirs = %{_libdir}
-include_dirs = /usr/include/suitesparse
-amd_libs = amd
 
-[umfpack]
+cat >> pyproject.toml << EOF
-library_dirs = %{_libdir}
-include_dirs = /usr/include/suitesparse
-umfpack_libs = umfpack
 
-[openblas]
+[tool.meson-python.args]
-library_dirs = %{_libdir}
+setup = ['-Duse-pythran=false']
-openblas_libs = openblasp
 EOF
 
+unzip %{SOURCE1}
+unzip %{SOURCE2} 
+unzip %{SOURCE3}
+unzip %{SOURCE4}
+unzip %{SOURCE5}
+mv array-api-compat-affd3a56927d3d1c178023121f43c9fa624eced0/* scipy/_lib/array_api_compat/
+mv math-6bfe5818acdf86432f3e1a78ec5e1d3cdb8c6480/* scipy/_lib/boost_math/
+mv HiGHS-4a122958a82e67e725d08153e099efe4dad099a2/* scipy/_lib/highs/
+mv unuran-1d315c690787b14781a12e0beca6d25cc75562d6/* scipy/_lib/unuran/
+mv PROPACK-96f6800451372dd003e627bbfd732937ac0c685e/* scipy/sparse/linalg/_propack/PROPACK/
+rm -rf array-api-compat-affd3a56927d3d1c178023121f43c9fa624eced0
+rm -rf math-6bfe5818acdf86432f3e1a78ec5e1d3cdb8c6480
+rm -rf HiGHS-4a122958a82e67e725d08153e099efe4dad099a2
+rm -rf unuran-1d315c690787b14781a12e0beca6d25cc75562d6
+rm -rf PROPACK-96f6800451372dd003e627bbfd732937ac0c685e
+
 rm -rf %{py3dir}
 cp -a . %{py3dir}
 
-
 %build
-export SCIPY_USE_PYTHRAN=0
 export CFLAGS="$RPM_OPT_FLAGS -lm"
-export LDFLAGS="$RPM_LD_FLAGS -Wall -shared"
+export PKG_CONFIG_PATH=/use/lib64/pkgconfig
 pushd %{py3dir}
 %global _hardening_clang_cflags %{nil}
 env FFLAGS="$RPM_OPT_FLAGS -fPIC -w -fallow-argument-mismatch -O2"\
-    OPENBLAS=%{_libdir} FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
+    %pyproject_build
-    %py3_build
 popd
 
 %install
-export SCIPY_USE_PYTHRAN=0
 export CFLAGS="$RPM_OPT_FLAGS -lm"
-export LDFLAGS="$RPM_LD_FLAGS -Wall -shared"
 
 pushd %{py3dir}
 env FFLAGS="$RPM_OPT_FLAGS -fPIC" \
-    OPENBLAS=%{_libdir} FFTW=%{_libdir} BLAS=%{_libdir} LAPACK=%{_libdir} \
+    %pyproject_install scipy
-    %py3_install
 popd
 
 find %{buildroot} -type f -name '*.so' -exec strip '{}' ';'
@@ -102,10 +109,13 @@ echo "%{_libdir}/%{name}" >> $RPM_BUILD_ROOT/etc/ld.so.conf.d/%{name}-%{_arch}.c
 %files -n python3-scipy
 %license LICENSE.txt
 %{python3_sitearch}/scipy
-%{python3_sitearch}/*.egg-info
+%{python3_sitearch}/*.dist-info
 %config(noreplace) /etc/ld.so.conf.d/*
 
 %changelog
+* Thu Feb 22 2024 Liu Chao <liuchao173@huawei.com> - 1.12.0-1
+- Upgrade to 1.12.0
+
 * Thu Feb 1 2024 Liu Chao <liuchao173@huawei.com> - 1.10.1-3
 - Fix scipy compile error in cython3