htslib.spec

@@ -1,13 +1,13 @@
 Name:    htslib
-Version: 1.19
+Version: 1.10.2
-Release: 1
+Release: 2
 Summary: C library for high-throughput sequencing data formats
 License: MIT and BSD
 URL:	 http://www.htslib.org
-Source0: https://github.com/samtools/htslib/releases/download/%{version}/htslib-%{version}.tar.bz2
+Source0: https://github.com/samtools/htslib/archive/%{name}-%{version}.tar.gz
+
+BuildRequires: 	gcc autoconf automake make curl-devel zlib-devel bzip2-devel xz-devel libxcrypt-devel openssl-devel
 
-BuildRequires: 	gcc make curl-devel zlib zlib-devel bzip2-devel xz-devel libxcrypt-devel openssl-devel
-BuildRequires:  autoconf automake libtool
 %description
 HTSlib is an implementation of a unified C library for accessing common file 
 formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, 
@@ -25,23 +25,18 @@ Requires: %{name} = %{version}-%{release}
 The %{name}-devel package contains libraries and header files for
 developing applications that use %{name}.
 
-%package tools
-Summary: Additional htslib-based tools
-Requires: %{name} = %{version}-%{release}
-
-%description tools
-Includes the popular tabix indexer, which indexes both .tbi and .csi formats,
-the htsfile identifier tool, and the bgzip compression utility.
-
-
 %prep
 %setup -q -n %{name}-%{version}
 
 %build
+autoheader
+autoconf
 %configure --prefix=%{_prefix} \
     --libdir=%{_libdir} \
     --enable-plugins \
-    --enable-libcurl 
+    --enable-gcs \
+    --enable-libcurl \
+    --enable-s3
 %make_build
 # As we don't install libhts.a, the .private keywords are irrelevant.
 sed -i -E '/^(Libs|Requires)\.private:/d' htslib.pc.tmp
@@ -55,12 +50,16 @@ rm -rf %{buildroot}/%{_libdir}/libhts.a
 %files
 %license LICENSE 
 %doc README NEWS README.large_positions.md
+%{_bindir}/*
 %{_libdir}/libhts.so.*
 %dir %{_libexecdir}/%{name}
 %{_libexecdir}/%{name}/hfile_gcs.so
 %{_libexecdir}/%{name}/hfile_libcurl.so
 %{_libexecdir}/%{name}/hfile_s3.so
 %{_libexecdir}/%{name}/hfile_s3_write.so
+%{_mandir}/man1/bgzip.1*
+%{_mandir}/man1/htsfile.1*
+%{_mandir}/man1/tabix.1*
 %{_mandir}/man5/faidx.5*
 %{_mandir}/man5/sam.5*
 %{_mandir}/man5/vcf.5*
@@ -72,32 +71,7 @@ rm -rf %{buildroot}/%{_libdir}/libhts.a
 %{_libdir}/libhts.so
 %{_libdir}/pkgconfig/htslib.pc
 
-%files tools
-%{_bindir}/bgzip
-%{_bindir}/htsfile
-%{_bindir}/tabix
-%{_bindir}/annot-tsv
-%{_mandir}/man1/annot-tsv.1*
-%{_mandir}/man1/bgzip.1*
-%{_mandir}/man1/htsfile.1*
-%{_mandir}/man1/tabix.1*
-
 %changelog
-* Fri Jan  5 2024 luojun <luojun.oerv@isrc.iscas.ac.cn> - 1.19-1
-- Update to 1.19
-
-* Wed May 24 2023 guoyizhang <kuoi@bioarchlinux.org> - 1.17-1
-- Update to 1.17
-
-* Wed Feb 09 2022 herengui <herengui@uniontech.com> - 1.11-1
-- update to 1.11, new version fixed CVE-2020-36403
-
-* Wed Jan 12 2022 Chen Chen <chen_aka_jan@163.com> - 1.10.2-4
-- fix config.guess and config.sub path error
-
-* Wed Jun 16 2021 zhao yang <yangzhao1@kylinos.cn> - 1.10.2-3
-- Add htslib-tools package
-
 * Fri Mar 26 2021 herengui <herengui@uniontech.com> - 1.10.2-2
 - Add compilation parameters, update package lists
 

htslib.yaml

@@ -1,4 +0,0 @@
-version_control: github
-src_repo: samtools/htslib
-tag_prefix: "^"
-separator: "."