408 lines
11 KiB
RPMSpec
408 lines
11 KiB
RPMSpec
%global with_mpich 1
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%global with_openmpi 1
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%if %{with_mpich}
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%global mpi_list mpich
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%endif
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%if %{with_openmpi}
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%global mpi_list %{?mpi_list} openmpi
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%endif
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%global so_version 200
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Name: hdf5
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Version: 1.12.1
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Release: 1
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Summary: A data model, library, and file format for storing and managing data
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License: GPL-2.0-or-later
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URL: https://portal.hdfgroup.org/display/HDF5/HDF5
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Source0: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.1/src/hdf5-1.12.1.tar.bz2
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Patch0: hdf5-LD_LIBRARY_PATH.patch
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Patch1: hdf5-gfortran12.patch
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Patch2: hdf5-build.patch
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Patch3: hdf5-wrappers.patch
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BuildRequires: gcc, gcc-c++
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BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-gfortran, time
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BuildRequires: automake libtool
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BuildRequires: openssh-clients
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BuildRequires: libaec-devel chrpath
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%description
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HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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%package devel
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Summary: HDF5 development files
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Provides: hdf5-static = %{version}-%{release}
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Obsoletes: hdf5-static < %{version}-%{release}
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: gcc-gfortran%{?_isa}
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%description devel
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HDF5 development headers and libraries.
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%if %{with_mpich}
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%package mpich
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Summary: HDF5 mpich libraries
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BuildRequires: mpich-devel
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Provides: %{name}-mpich2 = %{version}-%{release}
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Obsoletes: %{name}-mpich2 < %{version}-%{release}
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%description mpich
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HDF5 parallel mpich libraries
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%package mpich-devel
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Summary: HDF5 mpich development files
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Requires: %{name}-mpich%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: mpich-devel%{?_isa}
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Provides: %{name}-mpich2-devel = %{version}-%{release}
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Obsoletes: %{name}-mpich2-devel < %{version}-%{release}
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%description mpich-devel
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HDF5 parallel mpich development files
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%package mpich-static
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Summary: HDF5 mpich static libraries
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Requires: %{name}-mpich-devel%{?_isa} = %{version}-%{release}
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Provides: %{name}-mpich2-static = %{version}-%{release}
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Obsoletes: %{name}-mpich2-static < %{version}-%{release}
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%description mpich-static
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HDF5 parallel mpich static libraries
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%endif
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%if %{with_openmpi}
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%package openmpi
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Summary: HDF5 openmpi libraries
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BuildRequires: openmpi-devel
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%description openmpi
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HDF5 parallel openmpi libraries
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%package openmpi-devel
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Summary: HDF5 openmpi development files
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Requires: %{name}-openmpi%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: openmpi-devel%{?_isa}
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%description openmpi-devel
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HDF5 parallel openmpi development files
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%package openmpi-static
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Summary: HDF5 openmpi static libraries
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Requires: %{name}-openmpi-devel%{?_isa} = %{version}-%{release}
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%description openmpi-static
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HDF5 parallel openmpi static libraries
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%endif
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%prep
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%autosetup -n %{name}-%{version} -p1
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sed -i -e '/^STATIC_AVAILABLE=/s/=.*/=no/' */*/h5[cf]*.in
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autoreconf -f -i
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sed -e 's|-O -finline-functions|-O3 -finline-functions|g' -i config/gnu-flags
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%build
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%global _configure ../configure
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%global configure_opts \\\
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--disable-silent-rules \\\
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--enable-fortran \\\
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--enable-fortran2003 \\\
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--enable-hl \\\
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--enable-shared \\\
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--with-szlib \\\
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%{nil}
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export CC=gcc
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export CXX=g++
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export F9X=gfortran
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export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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mkdir build
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pushd build
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ln -s ../configure .
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%configure \
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%{configure_opts} \
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--enable-cxx
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sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
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make %{?_smp_mflags} LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" FCFLAGS="$FCFLAGS -fallow-argument-mismatch -fallow-invalid-boz"
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popd
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export CC=mpicc
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export CXX=mpicxx
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export F9X=mpif90
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export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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for mpi in %{?mpi_list}
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do
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mkdir $mpi
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pushd $mpi
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module load mpi/$mpi-%{_arch}
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ln -s ../configure .
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%configure \
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%{configure_opts} \
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FCFLAGS="$FCFLAGS -I$MPI_FORTRAN_MOD_DIR -fallow-argument-mismatch -fallow-invalid-boz" \
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--enable-parallel \
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--exec-prefix=%{_libdir}/$mpi \
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--libdir=%{_libdir}/$mpi/lib \
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--bindir=%{_libdir}/$mpi/bin \
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--sbindir=%{_libdir}/$mpi/sbin \
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--includedir=%{_includedir}/$mpi-%{_arch} \
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--datarootdir=%{_libdir}/$mpi/share \
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--mandir=%{_libdir}/$mpi/share/man
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sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
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make %{?_smp_mflags} LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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module purge
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popd
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done
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%install
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%make_install -C build
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%delete_la
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cat >h5comp <<EOF
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#!/bin/bash
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ARCH=$(uname -m)
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case $ARCH in
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x86_64 ) BITS=64;;
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* ) BITS=32;;
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esac
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exec $0-${BITS} "$@"
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EOF
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mkdir -p ${RPM_BUILD_ROOT}%{_fmoddir}
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mv ${RPM_BUILD_ROOT}%{_includedir}/*.mod ${RPM_BUILD_ROOT}%{_fmoddir}
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for mpi in %{?mpi_list}
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do
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module load mpi/$mpi-%{_arch}
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make -C $mpi install DESTDIR=${RPM_BUILD_ROOT}
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rm $RPM_BUILD_ROOT/%{_libdir}/$mpi/lib/*.la
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#Fortran modules
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mkdir -p ${RPM_BUILD_ROOT}${MPI_FORTRAN_MOD_DIR}
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mv ${RPM_BUILD_ROOT}%{_includedir}/${mpi}-%{_arch}/*.mod ${RPM_BUILD_ROOT}${MPI_FORTRAN_MOD_DIR}/
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module purge
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done
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find ${RPM_BUILD_ROOT}%{_datadir} \( -name '*.[ch]*' -o -name '*.f90' \) -exec chmod -x {} +
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%ifarch x86_64
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sed -i -e s/H5pubconf.h/H5pubconf-64.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
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mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
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${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-64.h
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for x in h5c++ h5cc h5fc
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do
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mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
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${RPM_BUILD_ROOT}%{_bindir}/${x}-64
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install -m 0755 h5comp ${RPM_BUILD_ROOT}%{_bindir}/${x}
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done
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%else
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sed -i -e s/H5pubconf.h/H5pubconf-32.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
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mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
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${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-32.h
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for x in h5c++ h5cc h5fc
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do
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mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
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${RPM_BUILD_ROOT}%{_bindir}/${x}-32
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install -m 0755 h5comp ${RPM_BUILD_ROOT}%{_bindir}/${x}
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done
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%endif
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mkdir -p ${RPM_BUILD_ROOT}/%{_rpmmacrodir}
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cat > ${RPM_BUILD_ROOT}/%{_rpmmacrodir}/macros.hdf5 <<EOF
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# HDF5 version is
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%%_hdf5_version %{version}
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EOF
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cd $RPM_BUILD_ROOT/usr
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file `find -type f`| grep -w ELF | awk -F":" '{print $1}' | for i in `xargs`
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do
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chrpath -d $i
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done
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cd -
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mkdir -p $RPM_BUILD_ROOT/etc/ld.so.conf.d
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echo "%{_libdir}/mpich/lib" > $RPM_BUILD_ROOT/etc/ld.so.conf.d/%{name}-%{_arch}.conf
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%check
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make %{?_smp_mflags} -C build check
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%ldconfig_scriptlets
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%post
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/sbin/ldconfig
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%postun
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/sbin/ldconfig
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%files
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%license COPYING
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%doc MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_bindir}/gif2h5
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%{_bindir}/h52gif
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%{_bindir}/h5clear
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%{_bindir}/h5copy
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%{_bindir}/h5debug
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%{_bindir}/h5diff
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%{_bindir}/h5dump
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%{_bindir}/h5format_convert
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%{_bindir}/h5import
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%{_bindir}/h5jam
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%{_bindir}/h5ls
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%{_bindir}/h5mkgrp
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%{_bindir}/h5perf_serial
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%{_bindir}/h5repack
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%{_bindir}/h5repart
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%{_bindir}/h5stat
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%{_bindir}/h5unjam
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%{_bindir}/h5watch
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%{_bindir}/mirror_server
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%{_bindir}/mirror_server_stop
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%{_libdir}/libhdf5.so.%{so_version}*
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%{_libdir}/libhdf5_cpp.so.%{so_version}*
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%{_libdir}/libhdf5_fortran.so.%{so_version}*
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%{_libdir}/libhdf5hl_fortran.so.%{so_version}*
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%{_libdir}/libhdf5_hl.so.%{so_version}*
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%{_libdir}/libhdf5_hl_cpp.so.%{so_version}*
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%config(noreplace) /etc/ld.so.conf.d/*
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%files devel
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%{_bindir}/h5c++*
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%{_bindir}/h5cc*
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%{_bindir}/h5fc*
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%{_bindir}/h5redeploy
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%{_includedir}/*.h
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%{_libdir}/*.so
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%{_libdir}/*.settings
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%{_fmoddir}/*.mod
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%{_datadir}/hdf5_examples/
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%{_libdir}/*.a
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%{_rpmmacrodir}/macros.hdf5
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%if %{with_mpich}
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%files mpich
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%license COPYING
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%doc MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_libdir}/mpich/bin/gif2h5
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%{_libdir}/mpich/bin/h52gif
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%{_libdir}/mpich/bin/h5clear
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%{_libdir}/mpich/bin/h5copy
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%{_libdir}/mpich/bin/h5debug
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%{_libdir}/mpich/bin/h5diff
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%{_libdir}/mpich/bin/h5dump
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%{_libdir}/mpich/bin/h5format_convert
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%{_libdir}/mpich/bin/h5import
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%{_libdir}/mpich/bin/h5jam
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%{_libdir}/mpich/bin/h5ls
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%{_libdir}/mpich/bin/h5mkgrp
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%{_libdir}/mpich/bin/h5redeploy
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%{_libdir}/mpich/bin/h5repack
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%{_libdir}/mpich/bin/h5perf
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%{_libdir}/mpich/bin/h5perf_serial
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%{_libdir}/mpich/bin/h5repart
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%{_libdir}/mpich/bin/h5stat
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%{_libdir}/mpich/bin/h5unjam
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%{_libdir}/mpich/bin/h5watch
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%{_libdir}/mpich/bin/mirror_server
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%{_libdir}/mpich/bin/mirror_server_stop
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%{_libdir}/mpich/bin/ph5diff
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%{_libdir}/mpich/lib/*.so.%{so_version}*
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%files mpich-devel
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%{_includedir}/mpich-%{_arch}
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%{_fmoddir}/mpich/*.mod
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%{_libdir}/mpich/bin/h5pcc
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%{_libdir}/mpich/bin/h5pfc
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%{_libdir}/mpich/lib/lib*.so
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%{_libdir}/mpich/lib/lib*.settings
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%{_libdir}/mpich/share/hdf5_examples/
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%files mpich-static
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%{_libdir}/mpich/lib/*.a
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%endif
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%if %{with_openmpi}
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%files openmpi
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%license COPYING
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%doc MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_libdir}/openmpi/bin/gif2h5
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%{_libdir}/openmpi/bin/h52gif
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%{_libdir}/openmpi/bin/h5clear
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%{_libdir}/openmpi/bin/h5copy
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%{_libdir}/openmpi/bin/h5debug
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%{_libdir}/openmpi/bin/h5diff
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%{_libdir}/openmpi/bin/h5dump
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%{_libdir}/openmpi/bin/h5format_convert
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%{_libdir}/openmpi/bin/h5import
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%{_libdir}/openmpi/bin/h5jam
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%{_libdir}/openmpi/bin/h5ls
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%{_libdir}/openmpi/bin/h5mkgrp
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%{_libdir}/openmpi/bin/h5perf
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%{_libdir}/openmpi/bin/h5perf_serial
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%{_libdir}/openmpi/bin/h5redeploy
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%{_libdir}/openmpi/bin/h5repack
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%{_libdir}/openmpi/bin/h5repart
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%{_libdir}/openmpi/bin/h5stat
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%{_libdir}/openmpi/bin/h5unjam
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%{_libdir}/openmpi/bin/h5watch
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%{_libdir}/openmpi/bin/mirror_server
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%{_libdir}/openmpi/bin/mirror_server_stop
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%{_libdir}/openmpi/bin/ph5diff
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%{_libdir}/openmpi/lib/*.so.%{so_version}*
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%files openmpi-devel
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%{_includedir}/openmpi-%{_arch}
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%{_fmoddir}/openmpi/*.mod
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%{_libdir}/openmpi/bin/h5pcc
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%{_libdir}/openmpi/bin/h5pfc
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%{_libdir}/openmpi/lib/lib*.so
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%{_libdir}/openmpi/lib/lib*.settings
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%{_libdir}/openmpi/share/hdf5_examples/
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%files openmpi-static
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%{_libdir}/openmpi/lib/*.a
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%endif
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%changelog
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* Thu Jun 23 2022 wulei <wulei80@h-partners.com> - 1.12.1-1
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- Upgrade to 1.12.1
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* Tue May 10 2022 Ge Wang <wangge20@h-partner.com> - 1.8.20-15
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- License compliance rectification
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* Fri Sep 10 2021 wangyue <wangyue92@huawei.com> - 1.8.20-14
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- fix rpath error
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* Mon Aug 2 2021 liushaofei <liushaofei5@huawei.com> - 1.8.20-13
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- fix incorrect arguments format
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* Thu Mar 25 2021 maminjie <maminjie1@huawei.com> - 1.8.20-12
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- Support parallel compilation
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* Fri Jan 15 2021 yanan li <liyanan32@huawei.com> - 1.8.20-11
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- add sub packages hdf5-openmpi-static, hdf5-openmpi-devel, hdf5-openmpi,
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- hdf5-mpich-static, hdf5-mpich-devel, hdf5-mpich
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* Mon Dec 14 2020 openEuler Buildteam <buildteam@openeuler.org> - 1.8.20-10
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- fix CVE-2017-17506 CVE-2018-17432 CVE-2018-17435 CVE-2018-13869 CVE-2018-13870 CVE-2018-13873
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* Mon Nov 9 2020 wangxiao <wangxiao65@huawei.com> - 1.8.20-9
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- fix CVE-2018-17233 CVE-2018-17234 CVE-2018-17237 CVE-2018-17434 CVE-2018-17437 CVE-2018-17438
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* Tue Sep 15 2020 shaoqiang kang <kangshaoqiang1@openeuler.org> - 1.8.20-8
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- Modify source
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* Tue Oct 22 2019 openEuler Buildteam <buildteam@openeuler.org> - 1.8.20-7
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- Package init
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