411 lines
12 KiB
RPMSpec
411 lines
12 KiB
RPMSpec
%global with_mpich 1
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%global with_openmpi 1
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%if %{with_mpich}
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%global mpi_list mpich
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%endif
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%if %{with_openmpi}
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%global mpi_list %{?mpi_list} openmpi
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%endif
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%global so_version 310
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Name: hdf5
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Version: 1.14.5
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Release: 1
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Summary: A data model, library, and file format for storing and managing data
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License: BSD-3-Clause
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URL: https://www.hdfgroup.org/solutions/hdf5/
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Source0: https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_5/downloads/hdf5-1.14.5.tar.gz
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Source1: h5comp
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Patch0: hdf5-wrappers.patch
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BuildRequires: gcc, gcc-c++
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BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-gfortran, time
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BuildRequires: automake libtool
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BuildRequires: openssh-clients
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BuildRequires: libaec-devel
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BuildRequires: environment-modules
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%description
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HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
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%package devel
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Summary: HDF5 development files
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Provides: hdf5-static = %{version}-%{release}
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Obsoletes: hdf5-static < %{version}-%{release}
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: gcc-gfortran%{?_isa}
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%description devel
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HDF5 development headers and libraries.
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%if %{with_mpich}
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%package mpich
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Summary: HDF5 mpich libraries
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BuildRequires: mpich-devel
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Provides: %{name}-mpich2 = %{version}-%{release}
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Obsoletes: %{name}-mpich2 < %{version}-%{release}
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%description mpich
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HDF5 parallel mpich libraries
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%package mpich-devel
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Summary: HDF5 mpich development files
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Requires: %{name}-mpich%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: mpich-devel%{?_isa}
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Provides: %{name}-mpich2-devel = %{version}-%{release}
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Obsoletes: %{name}-mpich2-devel < %{version}-%{release}
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%description mpich-devel
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HDF5 parallel mpich development files
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%package mpich-static
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Summary: HDF5 mpich static libraries
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Requires: %{name}-mpich-devel%{?_isa} = %{version}-%{release}
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Provides: %{name}-mpich2-static = %{version}-%{release}
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Obsoletes: %{name}-mpich2-static < %{version}-%{release}
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%description mpich-static
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HDF5 parallel mpich static libraries
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%endif
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%if %{with_openmpi}
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%package openmpi
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Summary: HDF5 openmpi libraries
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BuildRequires: openmpi-devel
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%description openmpi
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HDF5 parallel openmpi libraries
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%package openmpi-devel
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Summary: HDF5 openmpi development files
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Requires: %{name}-openmpi%{?_isa} = %{version}-%{release}
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Requires: libaec-devel%{?_isa}
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Requires: zlib-devel%{?_isa}
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Requires: openmpi-devel%{?_isa}
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%description openmpi-devel
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HDF5 parallel openmpi development files
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%package openmpi-static
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Summary: HDF5 openmpi static libraries
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Requires: %{name}-openmpi-devel%{?_isa} = %{version}-%{release}
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%description openmpi-static
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HDF5 parallel openmpi static libraries
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%endif
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%prep
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%autosetup -n %{name}-%{version} -p1
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sed -i -e '/^STATIC_AVAILABLE=/s/=.*/=no/' */*/h5[cf]*.in
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autoreconf -f -i
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sed -e 's|-O -finline-functions|-O3 -finline-functions|g' -i config/gnu-flags
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%build
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%global _configure ../configure
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%global configure_opts \\\
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--disable-silent-rules \\\
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--enable-fortran \\\
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--enable-hl \\\
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--enable-shared \\\
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--with-szlib \\\
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--enable-mirror-vfd \\\
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--disable-nonstandard-feature-float16 \\\
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%{nil}
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export CC=gcc
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export CXX=g++
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export F9X=gfortran
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export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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mkdir build
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pushd build
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ln -s ../configure .
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%configure \
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%{configure_opts} \
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--enable-cxx
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sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
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make %{?_smp_mflags} LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed" FCFLAGS="$FCFLAGS -fallow-argument-mismatch -fallow-invalid-boz"
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popd
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export CC=mpicc
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export CXX=mpicxx
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export F9X=mpif90
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export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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for mpi in %{?mpi_list}
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do
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mkdir $mpi
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pushd $mpi
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module load mpi/$mpi-%{_arch}
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ln -s ../configure .
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%configure \
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%{configure_opts} \
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FCFLAGS="$FCFLAGS -I$MPI_FORTRAN_MOD_DIR -fallow-argument-mismatch -fallow-invalid-boz" \
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--enable-parallel \
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--exec-prefix=%{_libdir}/$mpi \
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--libdir=%{_libdir}/$mpi/lib \
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--bindir=%{_libdir}/$mpi/bin \
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--sbindir=%{_libdir}/$mpi/sbin \
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--includedir=%{_includedir}/$mpi-%{_arch} \
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--datarootdir=%{_libdir}/$mpi/share \
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--mandir=%{_libdir}/$mpi/share/man
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sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
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make %{?_smp_mflags} LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
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module purge
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popd
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done
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%install
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%make_install -C build
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%delete_la
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mkdir -p ${RPM_BUILD_ROOT}%{_fmoddir}
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mv ${RPM_BUILD_ROOT}%{_includedir}/*.mod ${RPM_BUILD_ROOT}%{_fmoddir}
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for mpi in %{?mpi_list}
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do
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module load mpi/$mpi-%{_arch}
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make -C $mpi install DESTDIR=${RPM_BUILD_ROOT}
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rm $RPM_BUILD_ROOT/%{_libdir}/$mpi/lib/*.la
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#Fortran modules
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mkdir -p ${RPM_BUILD_ROOT}${MPI_FORTRAN_MOD_DIR}
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mv ${RPM_BUILD_ROOT}%{_includedir}/${mpi}-%{_arch}/*.mod ${RPM_BUILD_ROOT}${MPI_FORTRAN_MOD_DIR}/
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module purge
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done
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%ifarch x86_64
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sed -i -e s/H5pubconf.h/H5pubconf-64.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
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mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
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${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-64.h
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for x in h5c++ h5cc h5fc
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do
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mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
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${RPM_BUILD_ROOT}%{_bindir}/${x}-64
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install -m 0755 %SOURCE1 ${RPM_BUILD_ROOT}%{_bindir}/${x}
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done
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%else
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sed -i -e s/H5pubconf.h/H5pubconf-32.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
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mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
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${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-32.h
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for x in h5c++ h5cc h5fc
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do
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mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
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${RPM_BUILD_ROOT}%{_bindir}/${x}-32
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install -m 0755 %SOURCE1 ${RPM_BUILD_ROOT}%{_bindir}/${x}
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done
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%endif
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mkdir -p ${RPM_BUILD_ROOT}/%{_rpmmacrodir}
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cat > ${RPM_BUILD_ROOT}/%{_rpmmacrodir}/macros.hdf5 <<EOF
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# HDF5 version is
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%%_hdf5_version %{version}
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EOF
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%check
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make %{?_smp_mflags} -C build check
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%ldconfig_scriptlets
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%files
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%license COPYING
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%doc release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_bindir}/h5clear
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%{_bindir}/h5copy
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%{_bindir}/h5debug
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%{_bindir}/h5delete
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%{_bindir}/h5diff
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%{_bindir}/h5dump
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%{_bindir}/h5format_convert
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%{_bindir}/h5fuse
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%{_bindir}/h5import
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%{_bindir}/h5jam
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%{_bindir}/h5ls
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%{_bindir}/h5mkgrp
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%{_bindir}/h5perf_serial
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%{_bindir}/h5repack
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%{_bindir}/h5repart
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%{_bindir}/h5stat
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%{_bindir}/h5unjam
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%{_bindir}/h5watch
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%{_bindir}/mirror_server
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%{_bindir}/mirror_server_stop
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%{_libdir}/libhdf5.so.%{so_version}*
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%{_libdir}/libhdf5_cpp.so.%{so_version}*
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%{_libdir}/libhdf5_fortran.so.%{so_version}*
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%{_libdir}/libhdf5hl_fortran.so.%{so_version}*
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%{_libdir}/libhdf5_hl.so.%{so_version}*
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%{_libdir}/libhdf5_hl_cpp.so.%{so_version}*
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%files devel
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%{_bindir}/h5c++*
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%{_bindir}/h5cc*
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%{_bindir}/h5fc*
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%{_bindir}/h5redeploy
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%{_includedir}/*.h
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%{_includedir}/H5config_f.inc
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%{_libdir}/*.so
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%{_libdir}/*.settings
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%{_fmoddir}/*.mod
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%{_libdir}/*.a
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%{_rpmmacrodir}/macros.hdf5
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%if %{with_mpich}
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%files mpich
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%license COPYING
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%doc release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_libdir}/mpich/bin/h5clear
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%{_libdir}/mpich/bin/h5copy
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%{_libdir}/mpich/bin/h5debug
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%{_libdir}/mpich/bin/h5delete
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%{_libdir}/mpich/bin/h5diff
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%{_libdir}/mpich/bin/h5dump
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%{_libdir}/mpich/bin/h5format_convert
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%{_libdir}/mpich/bin/h5fuse
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%{_libdir}/mpich/bin/h5import
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%{_libdir}/mpich/bin/h5jam
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%{_libdir}/mpich/bin/h5ls
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%{_libdir}/mpich/bin/h5mkgrp
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%{_libdir}/mpich/bin/h5redeploy
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%{_libdir}/mpich/bin/h5repack
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%{_libdir}/mpich/bin/h5perf
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%{_libdir}/mpich/bin/h5perf_serial
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%{_libdir}/mpich/bin/h5repart
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%{_libdir}/mpich/bin/h5stat
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%{_libdir}/mpich/bin/h5unjam
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%{_libdir}/mpich/bin/h5watch
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%{_libdir}/mpich/bin/mirror_server
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%{_libdir}/mpich/bin/mirror_server_stop
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%{_libdir}/mpich/bin/ph5diff
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%{_libdir}/mpich/lib/*.so.%{so_version}*
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%files mpich-devel
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%{_includedir}/mpich-%{_arch}
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%{_fmoddir}/mpich/*.mod
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%{_libdir}/mpich/bin/h5pcc
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%{_libdir}/mpich/bin/h5pfc
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%{_libdir}/mpich/lib/lib*.so
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%{_libdir}/mpich/lib/lib*.settings
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%files mpich-static
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%{_libdir}/mpich/lib/*.a
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%endif
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%if %{with_openmpi}
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%files openmpi
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%license COPYING
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%doc release_docs/RELEASE.txt
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%doc release_docs/HISTORY*.txt
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%{_libdir}/openmpi/bin/h5clear
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%{_libdir}/openmpi/bin/h5copy
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%{_libdir}/openmpi/bin/h5debug
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%{_libdir}/openmpi/bin/h5delete
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%{_libdir}/openmpi/bin/h5diff
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%{_libdir}/openmpi/bin/h5dump
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%{_libdir}/openmpi/bin/h5format_convert
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%{_libdir}/openmpi/bin/h5fuse
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%{_libdir}/openmpi/bin/h5import
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%{_libdir}/openmpi/bin/h5jam
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%{_libdir}/openmpi/bin/h5ls
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%{_libdir}/openmpi/bin/h5mkgrp
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%{_libdir}/openmpi/bin/h5perf
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%{_libdir}/openmpi/bin/h5perf_serial
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%{_libdir}/openmpi/bin/h5redeploy
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%{_libdir}/openmpi/bin/h5repack
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%{_libdir}/openmpi/bin/h5repart
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%{_libdir}/openmpi/bin/h5stat
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%{_libdir}/openmpi/bin/h5unjam
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%{_libdir}/openmpi/bin/h5watch
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%{_libdir}/openmpi/bin/mirror_server
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%{_libdir}/openmpi/bin/mirror_server_stop
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%{_libdir}/openmpi/bin/ph5diff
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%{_libdir}/openmpi/lib/*.so.%{so_version}*
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%files openmpi-devel
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%{_includedir}/openmpi-%{_arch}
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%{_fmoddir}/openmpi/*.mod
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%{_libdir}/openmpi/bin/h5pcc
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%{_libdir}/openmpi/bin/h5pfc
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%{_libdir}/openmpi/lib/lib*.so
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%{_libdir}/openmpi/lib/lib*.settings
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%files openmpi-static
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%{_libdir}/openmpi/lib/*.a
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%endif
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%changelog
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* Wed Oct 30 2024 yaoxin <yao_xin001@hoperun.com> - 1.14.5-1
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- Update to 1.14.5:
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* Added signed Windows msi binary and signed Apple dmg binary files.
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* Moved examples to the HDF5Examples folder in the source tree.
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* Added support for using zlib-ng package as the zlib library
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* Disable CMake UNITY_BUILD for hdf5
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* Removed "function/code stack" debugging configuration option
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* Added configure options for enabling/disabling non-standard programming language features
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* Added the CMake variable HDF5_ENABLE_ROS3_VFD to the HDF5 CMake config
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file hdf5-config.cmake. This allows it to easily detect if the library
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has been built with or without read-only S3 functionality.
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* Fixed many CVE:
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CVE-2024-29157,CVE-2024-29158,CVE-2024-29159,CVE-2024-29160,CVE-2024-29161,CVE-2024-29162
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CVE-2024-29163,CVE-2024-29164,CVE-2024-29165,CVE-2024-29166,CVE-2024-32605,CVE-2024-32606
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CVE-2024-32607,CVE-2024-32608,CVE-2024-32609,CVE-2024-32610,CVE-2024-32611,CVE-2024-32612
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CVE-2024-32613,CVE-2024-32614,CVE-2024-32615,CVE-2024-32616,CVE-2024-32617,CVE-2024-32618
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CVE-2024-32619,CVE-2024-32620,CVE-2024-32621,CVE-2024-32622,CVE-2024-32623,CVE-2024-32624
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CVE-2024-33873,CVE-2024-33874,CVE-2024-33875,CVE-2024-33876,CVE-2024-33877,CVE-2018-13871
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CVE-2018-13875,CVE-2018-14034
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* Wed Dec 20 2023 wangkai <13474090681@163.com> - 1.12.1-6
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- Add disable-hltools flag to fix CVE-2018-17433, CVE-2018-17436, CVE-2020-10809
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* Thu Aug 31 2023 xu_ping <707078654@qq.com> - 1.12.1-5
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- Add BuildRequires environment-modules
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* Tue Apr 11 2023 liyanan <thistleslyn@163.com> - 1.12.1-4
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- Preserve the rpath of the hdf5-openmpi and hdf5-mpich subpackages
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* Mon Apr 10 2023 xu_ping <707078654@qq.com> - 1.12.1-3
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- fix some commands failed
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* Tue Mar 28 2023 yaoxin <yaoxin30@h-partners.com> - 1.12.1-2
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- Fix CVE-2018-13867,CVE-2018-14031,CVE-2018-16438,CVE-2019-8396,CVE-2020-10812 and CVE-2021-37501
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* Thu Jun 23 2022 wulei <wulei80@h-partners.com> - 1.12.1-1
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- Upgrade to 1.12.1
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* Tue May 10 2022 Ge Wang <wangge20@h-partner.com> - 1.8.20-15
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- License compliance rectification
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* Fri Sep 10 2021 wangyue <wangyue92@huawei.com> - 1.8.20-14
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- fix rpath error
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* Mon Aug 2 2021 liushaofei <liushaofei5@huawei.com> - 1.8.20-13
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- fix incorrect arguments format
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* Thu Mar 25 2021 maminjie <maminjie1@huawei.com> - 1.8.20-12
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- Support parallel compilation
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* Fri Jan 15 2021 yanan li <liyanan32@huawei.com> - 1.8.20-11
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- add sub packages hdf5-openmpi-static, hdf5-openmpi-devel, hdf5-openmpi,
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- hdf5-mpich-static, hdf5-mpich-devel, hdf5-mpich
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* Mon Dec 14 2020 openEuler Buildteam <buildteam@openeuler.org> - 1.8.20-10
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- fix CVE-2017-17506 CVE-2018-17432 CVE-2018-17435 CVE-2018-13869 CVE-2018-13870 CVE-2018-13873
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* Mon Nov 9 2020 wangxiao <wangxiao65@huawei.com> - 1.8.20-9
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- fix CVE-2018-17233 CVE-2018-17234 CVE-2018-17237 CVE-2018-17434 CVE-2018-17437 CVE-2018-17438
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* Tue Sep 15 2020 shaoqiang kang <kangshaoqiang1@openeuler.org> - 1.8.20-8
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- Modify source
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* Tue Oct 22 2019 openEuler Buildteam <buildteam@openeuler.org> - 1.8.20-7
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- Package init
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