package init

2020-02-14 14:01:32 +08:00 · 2020-02-14 14:01:32 +08:00 · 4566b2f4da
commit 4566b2f4da
parent ea7ecbdbe3
5 changed files with 284 additions and 0 deletions
--- a/hdf5-1.8.20.tar.bz2
+++ b/hdf5-1.8.20.tar.bz2
--- a/hdf5-LD_LIBRARY_PATH.patch
+++ b/hdf5-LD_LIBRARY_PATH.patch
@ -0,0 +1,21 @@
+diff -up hdf5-1.8.13/src/Makefile.am.LD_LIBRARY_PATH hdf5-1.8.13/src/Makefile.am
+--- hdf5-1.8.13/src/Makefile.am.LD_LIBRARY_PATH	2014-05-05 20:13:01.000000000 -0600
+++ hdf5-1.8.13/src/Makefile.am	2014-05-15 09:53:59.569476295 -0600
+@@ -128,8 +128,6 @@ settings_DATA=libhdf5.settings
+ # Remove the generated .c file if errors occur unless HDF5_Make_Ignore
+ # is set to ignore the error.
+ H5Tinit.c: H5detect$(EXEEXT)
+-	LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) |                  \
+-		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
+ 	$(RUNSERIAL) ./H5detect$(EXEEXT) > $@  ||                               \
+ 	    (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||          \
+ 	    ($(RM) $@ ; exit 1)
+@@ -140,8 +138,6 @@ H5Tinit.c: H5detect$(EXEEXT)
+ # Remove the generated .c file if errors occur unless HDF5_Make_Ignore
+ # is set to ignore the error.
+ H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings
+-	LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) |                  \
+-		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
+ 	$(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@  ||                               \
+ 	    (test $$HDF5_Make_Ignore && echo "*** Error ignored") ||          \
+ 	    ($(RM) $@ ; exit 1)
--- a/hdf5-ldouble-ppc64le.patch
+++ b/hdf5-ldouble-ppc64le.patch
@ -0,0 +1,75 @@
+diff -up hdf5-1.8.16/configure.ac.ldouble-ppc64le hdf5-1.8.16/configure.ac
+--- hdf5-1.8.16/configure.ac.ldouble-ppc64le	2015-11-13 09:29:08.749125801 -0700
+++ hdf5-1.8.16/configure.ac	2015-11-13 09:47:02.705174991 -0700
+@@ -2278,6 +2278,13 @@ else
+                 unsigned char       s2[8];
+                 int                 ret = 1;
+                 
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+                /* Don't bother checking on ppc64le, we know it'll work, and
+                 * that what hdf5 calls 'special algorithm' simply is
+                 * IBM ldouble 128 (i.e. two seperately scaled doubles).
+                 * The check below assumes big endian.  */
+                ret = 0;
+#endif
+                 if(sizeof(long double) == 16 && sizeof(long) == 8) {
+                     /*make sure the long double type has 16 bytes in size and 
+                      * 11 bits of exponent.  If it is,
+@@ -2355,6 +2362,13 @@ else
+                 unsigned char       s[16];
+                 int                 flag=0, ret=1;
+             
+#if defined __powerpc64__ && defined _LITTLE_ENDIAN
+                /* Don't bother checking on ppc64le, we know it'll work, and
+                 * that what hdf5 calls 'special algorithm' simply is
+                 * IBM ldouble 128 (i.e. two seperately scaled doubles).
+                 * The check below assumes big endian.  */
+                ret = 0;
+#endif
+                 /*Determine if long double has 16 byte in size, 11 bit exponent, and
+                  *the bias is 0x3ff */ 
+                 if(sizeof(long double) == 16) { 
+diff -up hdf5-1.8.16/configure.ldouble-ppc64le hdf5-1.8.16/configure
+diff -up hdf5-1.8.16/test/dt_arith.c.ldouble-ppc64le hdf5-1.8.16/test/dt_arith.c
+--- hdf5-1.8.16/test/dt_arith.c.ldouble-ppc64le	2015-10-23 23:13:43.000000000 -0600
+++ hdf5-1.8.16/test/dt_arith.c	2015-11-13 09:29:08.765125707 -0700
+@@ -3010,7 +3010,18 @@ test_conv_flt_1 (const char *name, int r
+                         buf, saved, nelmts);
+ #if H5_SIZEOF_LONG_DOUBLE!=H5_SIZEOF_DOUBLE && H5_SIZEOF_LONG_DOUBLE!=0
+             } else if(src_type == FLT_LDOUBLE) {
+-                 INIT_FP_SPECIAL(src_size, src_nbits, sendian, LDBL_MANT_DIG, dst_size,
+                size_t mant_dig = LDBL_MANT_DIG;
+                if (mant_dig >= src_nbits) {
+                    /* This happens for IBM long double in little endian.
+                       The macro LDBL_MANT_DIG says 106 mantissa bits, but the
+                       HDF5 detection code actually represents it as a normal 64bit
+                       double (52 bit mantissa) with the upper double being
+                       unspec bits (which is sort of okay as the testsuite
+                       wouldn't deal with that format correctly anyway).  So
+                       override the mantissa size.  */
+                    mant_dig = 52;
+                }
+                 INIT_FP_SPECIAL(src_size, src_nbits, sendian, mant_dig, dst_size,
+                         buf, saved, nelmts);
+ #endif
+             } else
+@@ -3663,7 +3674,18 @@ test_conv_int_fp(const char *name, int r
+             INIT_FP_DENORM(long double, LDBL_MANT_DIG, src_size, src_nbits, sendian, dst_size,
+                     buf, saved, nelmts);
+         } else {
+-            INIT_FP_SPECIAL(src_size, src_nbits, sendian, LDBL_MANT_DIG, dst_size, buf, saved, nelmts);
+           size_t mant_dig = LDBL_MANT_DIG;
+           if (mant_dig >= src_nbits) {
+               /* This happens for IBM long double in little endian.
+                  The macro LDBL_MANT_DIG says 106 mantissa bits, but the
+                  HDF5 detection code actually represents it as a normal 64bit
+                  double (52 bit mantissa) with the upper double being
+                  unspec bits (which is sort of okay as the testsuite
+                  wouldn't deal with that format correctly anyway).  So
+                  override the mantissa size.  */
+               mant_dig = 52;
+           }
+            INIT_FP_SPECIAL(src_size, src_nbits, sendian, mant_dig, dst_size, buf, saved, nelmts);
+         }
+ #endif
+     } else
--- a/hdf5-mpi.patch
+++ b/hdf5-mpi.patch
@ -0,0 +1,29 @@
+diff -up hdf5-1.8.16/testpar/t_pflush1.c.mpi hdf5-1.8.16/testpar/t_pflush1.c
+--- hdf5-1.8.16/testpar/t_pflush1.c.mpi	2015-10-23 23:13:44.000000000 -0600
+++ hdf5-1.8.16/testpar/t_pflush1.c	2016-03-20 21:46:42.089409776 -0600
+@@ -171,6 +171,7 @@ main(int argc, char* argv[])
+      * because MPI_File_close wants to modify the file-handle variable.
+      */
+ 
+#if 0
+     /* close file1 */
+     if(H5Fget_vfd_handle(file1, fapl, (void **)&mpifh_p) < 0) {
+ 	printf("H5Fget_vfd_handle for file1 failed\n");
+@@ -189,14 +190,17 @@ main(int argc, char* argv[])
+ 	printf("MPI_File_close for file2 failed\n");
+ 	goto error;
+     } /* end if */
+#endif
+ 
+     fflush(stdout);
+     fflush(stderr);
+    MPI_Finalize();
+     HD_exit(0);
+ 
+ error:
+     fflush(stdout);
+     fflush(stderr);
+    MPI_Finalize();
+     HD_exit(1);
+ }
+ 
--- a/hdf5.spec
+++ b/hdf5.spec
@ -0,0 +1,159 @@
+Name: hdf5
+Version: 1.8.20
+Release: 7
+Summary: A data model, library, and file format for storing and managing data
+License: BSD
+
+URL: https://portal.hdfgroup.org/display/HDF5/HDF5
+Source0: https://support.hdfgroup.org/ftp/HDF5/current18/src/hdf5-%{version}.tar.bz2
+
+Patch0: hdf5-LD_LIBRARY_PATH.patch
+Patch1: hdf5-mpi.patch
+Patch2: hdf5-ldouble-ppc64le.patch
+
+BuildRequires: gcc, gcc-c++
+BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-gfortran, time
+BuildRequires: automake libtool
+BuildRequires: openssh-clients
+BuildRequires: libaec-devel
+
+%description
+HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
+
+%package devel
+Summary: HDF5 development files
+Requires: %{name}%{?_isa} = %{version}-%{release}
+Requires: libaec-devel%{?_isa}
+Requires: zlib-devel%{?_isa}
+Requires: gcc-gfortran%{?_isa}
+
+%description devel
+HDF5 development headers and libraries.
+
+%prep
+%setup -q -n %{name}-%{version}
+%patch0 -p1
+%patch1 -p1
+%patch2 -p1
+%patch3 -p1
+
+sed -i -e '/^STATIC_AVAILABLE=/s/=.*/=no/' */*/h5[cf]*.in
+autoreconf -f -i
+
+sed -e 's|-O -finline-functions|-O3 -finline-functions|g' -i config/gnu-flags
+
+%build
+%global _configure ../configure
+%global configure_opts \\\
+  --disable-silent-rules \\\
+  --enable-fortran \\\
+  --enable-fortran2003 \\\
+  --enable-hl \\\
+  --enable-shared \\\
+  --with-szlib \\\
+%{nil}
+
+export CC=gcc
+export CXX=g++
+export F9X=gfortran
+export LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
+mkdir build
+pushd build
+ln -s ../configure .
+%configure \
+  %{configure_opts} \
+  --enable-cxx
+sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
+make LDFLAGS="%{__global_ldflags} -fPIC -Wl,-z,now -Wl,--as-needed"
+popd
+
+%install
+%make_install -C build
+%delete_la
+cat >h5comp <<EOF
+#!/bin/bash
+
+ARCH=$(uname -m)
+
+case $ARCH in
+    x86_64 ) BITS=64;;
+         * ) BITS=32;;
+esac
+
+exec $0-${BITS} "$@"
+EOF
+mkdir -p ${RPM_BUILD_ROOT}%{_fmoddir}
+mv ${RPM_BUILD_ROOT}%{_includedir}/*.mod ${RPM_BUILD_ROOT}%{_fmoddir}
+find ${RPM_BUILD_ROOT}%{_datadir} \( -name '*.[ch]*' -o -name '*.f90' \) -exec chmod -x {} +
+
+%ifarch x86_64
+sed -i -e s/H5pubconf.h/H5pubconf-64.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
+mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
+   ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-64.h
+for x in h5c++ h5cc h5fc
+do
+  mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
+     ${RPM_BUILD_ROOT}%{_bindir}/${x}-64
+  install -m 0755 h5comp ${RPM_BUILD_ROOT}%{_bindir}/${x}
+done
+%else
+sed -i -e s/H5pubconf.h/H5pubconf-32.h/ ${RPM_BUILD_ROOT}%{_includedir}/H5public.h
+mv ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf.h \
+   ${RPM_BUILD_ROOT}%{_includedir}/H5pubconf-32.h
+for x in h5c++ h5cc h5fc
+do
+  mv ${RPM_BUILD_ROOT}%{_bindir}/${x} \
+     ${RPM_BUILD_ROOT}%{_bindir}/${x}-32
+  install -m 0755 h5comp ${RPM_BUILD_ROOT}%{_bindir}/${x}
+done
+%endif
+
+mkdir -p ${RPM_BUILD_ROOT}/%{_rpmmacrodir}
+cat > ${RPM_BUILD_ROOT}/%{_rpmmacrodir}/macros.hdf5 <<EOF
+# HDF5 version is
+%%_hdf5_version %{version}
+EOF
+
+%check
+make -C build check
+%ldconfig_scriptlets
+
+%files
+%license COPYING
+%doc MANIFEST README.txt release_docs/RELEASE.txt
+%doc release_docs/HISTORY*.txt
+%{_bindir}/gif2h5
+%{_bindir}/h52gif
+%{_bindir}/h5copy
+%{_bindir}/h5debug
+%{_bindir}/h5diff
+%{_bindir}/h5dump
+%{_bindir}/h5import
+%{_bindir}/h5jam
+%{_bindir}/h5ls
+%{_bindir}/h5mkgrp
+%{_bindir}/h5perf_serial
+%{_bindir}/h5repack
+%{_bindir}/h5repart
+%{_bindir}/h5stat
+%{_bindir}/h5unjam
+%{_libdir}/*.so.10*
+%{_libdir}/libhdf5_cpp.so.15*
+%{_libdir}/libhdf5_hl_cpp.so.11*
+
+%files devel
+%{_bindir}/h5c++*
+%{_bindir}/h5cc*
+%{_bindir}/h5fc*
+%{_bindir}/h5redeploy
+%{_includedir}/*.h
+%{_libdir}/*.so
+%{_libdir}/*.settings
+%{_fmoddir}/*.mod
+%{_datadir}/hdf5_examples/
+%{_libdir}/*.a
+%{_rpmmacrodir}/macros.hdf5
+
+%changelog
+* Tue Oct 22 2019 openEuler Buildteam <buildteam@openeuler.org> - 1.8.20-7
+- Package init