diff --git a/cufflinks.spec b/cufflinks.spec index 774e9fb..d8e4edc 100644 --- a/cufflinks.spec +++ b/cufflinks.spec @@ -1,6 +1,6 @@ Name: cufflinks Version: 2.2.1 -Release: 2 +Release: 3 Summary: Transcriptome assembly and differential expression analysis for RNA-Seq. License: GPL-3.0-only and BSL-1.0 @@ -16,10 +16,11 @@ Patch5: 0006-format-security.patch Patch6: 0007-py2to3.patch Patch7: 0008-boost_bind_header.patch Patch8: multiple-definition-linker-error.patch +Patch9: no_svnversion.patch BuildRequires: boost boost-serialization boost-system boost-thread boost-devel samtools samtools-devel htslib htslib-devel BuildRequires: gcc gcc-c++ gcc-gfortran make autoconf gmp mpfr openmpi java-1.8.0-openjdk-headless -BuildRequires: python3 ncurses-devel eigen3-devel xz-devel bzip2-devel zlib-devel +BuildRequires: python3 ncurses-devel eigen3-devel xz-devel bzip2-devel zlib-devel automake Recommends: gffread @@ -62,6 +63,9 @@ find %{buildroot}/%{_bindir}/ -type f -name gffread -delete %changelog +* Thu Feb 10 2022 herengui - 2.2.1-3 +- fix build issue. + * Sat Aug 07 2021 wangyue - 2.2.1-2 - Fix FTBFS with GCC 10 diff --git a/no_svnversion.patch b/no_svnversion.patch new file mode 100644 index 0000000..88a0604 --- /dev/null +++ b/no_svnversion.patch @@ -0,0 +1,32 @@ +From 8fe33f6c21af2e620d0051fe042454400e7b228d Mon Sep 17 00:00:00 2001 +From: herengui +Date: Thu, 10 Feb 2022 14:10:12 +0800 +Subject: [PATCH] no svnversion + +Signed-off-by: herengui +--- + configure.ac | 2 -- + 1 file changed, 2 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 96ffbac..ce9936f 100755 +--- a/configure.ac ++++ b/configure.ac +@@ -6,14 +6,12 @@ m4_include([ax_bam.m4]) + m4_include([ax_check_zlib.m4]) + m4_include([ax_check_eigen.m4]) + +-define([svnversion], esyscmd([sh -c "svnversion|tr -d '\n'"]))dnl + AC_INIT([cufflinks], [2.2.1], [cole@cs.umd.edu]) + AC_DEFINE(SVN_REVISION, "svnversion", [SVN Revision]) + + AC_CONFIG_SRCDIR([config.h.in]) + AC_CONFIG_HEADERS([config.h]) + AC_CONFIG_AUX_DIR([build-aux]) +-AM_INIT_AUTOMAKE + + #AM_PATH_CPPUNIT(1.10.2) + +-- +2.20.1 +