66 lines
1.6 KiB
Diff
66 lines
1.6 KiB
Diff
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diff --git a/ax_check_eigen.m4 b/ax_check_eigen.m4
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index 02234d8..a7d070a 100644
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--- a/ax_check_eigen.m4
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+++ b/ax_check_eigen.m4
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@@ -66,7 +66,7 @@ export EIGEN_CPPFLAGS
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AC_LANG_PUSH(C++)
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AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
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-@%:@include <Eigen/Dense>
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+@%:@include <eigen3/Eigen/Dense>
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]], [[
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]])],[
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AC_MSG_RESULT(yes)
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diff --git a/src/abundances.cpp b/src/abundances.cpp
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index c95c2ca..cb8073f 100644
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--- a/src/abundances.cpp
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+++ b/src/abundances.cpp
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@@ -50,7 +50,7 @@
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#include "negative_binomial_distribution.h"
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-#include <Eigen/Dense>
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+#include <eigen3/Eigen/Dense>
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//using Eigen::MatrixXd;
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//#ifdef __USE_ISOC99
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diff --git a/src/abundances.h b/src/abundances.h
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index a3f8469..fd45821 100644
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--- a/src/abundances.h
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+++ b/src/abundances.h
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@@ -18,7 +18,7 @@
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#include <boost/numeric/ublas/matrix.hpp>
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#include <boost/numeric/ublas/vector.hpp>
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-#include <Eigen/Dense>
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+#include <eigen3/Eigen/Dense>
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#include "hits.h"
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#include "scaffolds.h"
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diff --git a/src/jensen_shannon.h b/src/jensen_shannon.h
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index 96d6132..038a88a 100644
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--- a/src/jensen_shannon.h
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+++ b/src/jensen_shannon.h
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@@ -14,7 +14,7 @@
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#include <boost/numeric/ublas/io.hpp>
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#include <vector>
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-#include <Eigen/Dense>
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+#include <eigen3/Eigen/Dense>
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namespace ublas = boost::numeric::ublas;
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diff --git a/src/sampling.h b/src/sampling.h
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index d430a34..368b9af 100644
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--- a/src/sampling.h
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+++ b/src/sampling.h
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@@ -35,7 +35,7 @@
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#include <boost/random/variate_generator.hpp>
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#include <boost/math/constants/constants.hpp>
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-#include <Eigen/Dense>
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+#include <eigen3/Eigen/Dense>
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// Boost Cholesky factorizations in the spirit of lu.hpp
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// Written by Robbie Vogt, found at:
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